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Technische Universität München

Publikationen

Ann-Marie Waldvogel (née Oppold) → ORCID ID: 0000-0003-2637-0766 → WOS ResearcherID: GYD-8903-2022
Alexandra Schoenle → ORCID ID: 0000-0002-0047-8077

 

Preprints in Begutachtung

  • Mach N, Pettrich LC, Villegas LI, Waldvogel AM, Schiffer P, Holovachov O (2025). Description of Cervidellus hueckeswagensis sp. nov. and Stegelleta waltrauti sp. nov. (Nematoda: Rhabditida: Cephalobidae) from the Atacama Desert in Chile (under review).
     
  • Villegas LI, Jimenez L, van der Sprong J, Holovachov O, Waldvogel AMW, H. Schiffer P (under review). Ultraconserved elements coupled with machine learning approaches resolve the systematics in model nematode species. Manuscript available on bioRxiv, doi: 10.1101/2025.05.06.652396
     
  • Villegas LI, Pettrich LC, Acevedo-Trejos E, Suwanngam A, Wassey N, Allende ML, Stoll A, Holovachov O, Waldvogel AM* & Schiffer P* (under review): Soil biodiversity in the Atcama Desert shows distinct patterns at different diversity levels. Manuscript available at bioRxiv, doi: 10.1101/2024.09.30.615889
     

  • Pettrich LC, King R, Field LM, AM Waldvogel (under review): The interplay of recombination landscape, a transposable element and population history in European populations of Chironomus riparius. Mansucript available at bioRxiv, doi: 10.1101/2024.04.04.588075

     

2025

  • Schoenle A, Francis O, Archibald JM, Burki F, de Vries J, Dumack K, Eme L, Florent I, Hehenberger E, Hoffmeyer TT, Irisarri I, Lara E, Leger MM, Lukeš J, Massana R, Mathur V, Nitsche F, Strassert JFH, Worden AZ, Yurchenko V, Del Campo J, Waldvogel AM (2025). Protist genomics: key to understanding eukaryotic evolution. Trends Genet. 2025 Jun 13:S0168-9525(25)00111-8. doi: 10.1016/j.tig.2025.05.004. Epub ahead of print. PMID: 40517085.
     

  • Kraege A, Chavarro-Carrero E, Schnell E, Heilmann-Heimbach S, Becker K, Köhrer K, Huettel B, Sargheini N, Schiffer P, Waldvogel AM, Thomma BPHJ, Rovenich H (2025). High quality genome assembly and annotation (v1) of the eukaryotic freshwater microalga Coccomyxa elongata SAG 216-3b, G3 Genes|Genomes|Genetics, Volume 15, Issue 2, February 2025, jkae294, doi: 10.1093/g3journal/jkae294

     

2024

  • Schoenle A, Guiglielmoni N, Mainz T, Greve C, Hamadou AB, Heermann L, Borcherding J, AM Waldvogel (2024): De Novo Genome assembly of the
    Caucasian dwarf goby Knipowitschia cf. caucasica, a new alien Gobiidae invading the River Rhine. PCI Genomics, doi: 10.24072/pcjournal.490
     
  • Lampert KP, Heermann L, Storm S, Hirsch PE, Cerwenka AF, Heubel K, Borcherding J, AM Waldvogel (2024): Round gobies (Neogobius melanostomus) in the River Rhine: Population genetic support for invasion via two different routes. PLoS ONE 19(9): e0310692. doi: 10.1371/journal.pone.0310692
     
  • Schoenle A, Scepanski D, Floß A, Büchel P, Koblitz AK, Scherwaß A, Arndt H*, AM Waldvogel* (2024): The dilemma of underestimating freshwater biodiversity: morphological and molecular approaches. BMC Ecology and Evolution, 24:69, doi: 10.1186/s12862-024-02261-y
     
  • Popovic I, Bergeron LA, Bozec YM, Waldvogel AM, Howitt SM, Katarina Damjanovic, Patel F, Cabrera MG, Wörheide G, Sven Uthicke S, C Riginos (2024): High germline mutation rates but not extreme population size outbreaks influence genetic diversity in crown-of-thorns sea stars. PLOS Genetics, doi: 10.1371/journal.pgen.1011129
     
  • Scepanski D, Augustin N, Hohlfeld M, Scherwaß A, Xavier JR, Werner J, Waldvogel AM & H Arndt (2024): Vertical distribution of epibenthic megafauna of a large seamount west of Cape Verde islands (southern North Atlantic). Marine Biodiversity 54:6, doi: 10.1007/s12526-023-01400-w
     

  • Villegas LI, Ferretti L, Wiehe T, Waldvogel AM*, Schiffer PH* (2024): Parthenogenomics: Insights on mutation rates and nucleotide diversity in parthenogenetic Panagrolaimus nematodes. Ecology & Evolution, 14:e10831, doi: 10.1002/ece3.10831

     

2023

  • Theissinger K*, Fernandes C*, Formenti G*, Bista I, Berg PR, Bleidorn C, Bombarely A, Crottini A, Gallo GR, Godoy JA, Jentoft S, Malukiewicz J, Mouton A, Oomen RA, Paez S, Palsbøll PJ, Pampoulie C, Ruiz-López MJ, Secomandi S, Svardal H, Theofanopoulou C, de Vries J, Waldvogel AM, Zhang G, Jarvis ED, Bálint M, Ciofi C, Waterhouse RM, Mazzoni CJ, Höglund J & The European Reference Genome Atlas Consortium (2023): How genomics can help biodiversity conservation. Trends in Genetics, doi: 10.1016/j.tig.2023.01.005.
     
  • Kramer IM, Pfenninger M, Feldmeyer B, Dhimal M, Gautam I, Shreshta P, Baral S, Phuyal P, Hartke J, Magedburg M, Groneberg DA, Ahrens B, Müller R*, Waldvogel AM* (2023): Genomic profiling of climate adaptation in Aedes aegypti along an altitudinal gradient in Nepal indicates non-gradual expansion of the disease vector. Molecular Ecology, 32:2, doi: 10.1111/mec.16752.
     
  • Pfenninger M, Foucault Q, Waldvogel AM, Feldmeyer B (2023): Selective effects of a short transient environmental fluctuation on a natural population. Molecular Ecology, 32:2, doi: 10.1111/mec.16748.

 

2022

  • Pollegioni P, Persampieri T, Minuz RL, Bucci A, Trusso A, Di Martino S, Leo C, Bruttini M, Ciolfi M, Waldvogel AM, Tripet F, Simoni A, Crisanti A, Müller R (2022): Introgression of a synthetic sex ratio distortion transgene into different genetic backgrounds of Anopheles coluzzii. Molecular Insect Biology, 32:1, doi: 10.1111/imb.12813
     
  • Formenti G*, Theissinger K*, Fernandes C*, Bista I, Bombarely B, Bleidorn B, Ciofi C, Crottini A, Godoy JA, Höglund J, Malukiewicz J, Mouton A, Oomen RA, Paez S, Palsbøll PJ, Pampoulie C, MJRuiz-López, Svardal H,  Theofanopoulou C, de Vries J, Waldvogel AM, Zhang G, Mazzoni CJ, Jarvis JE, Bálint M+, and The European Reference Genome Atlas (ERGA) Consortium (2021): The era of reference genomes in conservation genomics. Trends in Ecology and Evolution 37:3, doi: 10.1016/j.tree.2021.11.008.

 

2021

  • Stelzer CP, Blommaert J, Waldvogel AM, Pichler M , Hecox-Lea B & Mark Welch DB (2021): Comparative analysis reveals within-population genome size variation in a rotifer is driven by large genomic elements with highly abundant satellite DNA repeat elements. BMC Biology, doi: 10.1186/s12915-021-01134-w
     
  • Waldvogel AM & Pfenninger M (2021): Temperature-dependence of spontaneous mutation rates. Genome Research, doi: 10.1101/gr.275168.120

 

2020

  • Doria HB, Waldvogel AM, Pfenninger M (2020): Measuring mutagenicity in ecotoxicology: A case study of Cd exposure in Chironomus riparius. Environmental Pollution, doi: /10.1016/j.envpol.2020.116004
     
  • Hartke J, Waldvogel AM, Sprenger PP, Schmitt T, Menzel F, Pfenninger M, Feldmeyer B (2020): Little parallelism in genomic signatures of local adaptation in two sympatric, cryptic sister species. Journal of Evolutionary Biology. doi: 10.1111/jeb.13742
     
  • Waldvogel AM, Schreiber D, Pfenninger M, Feldmeyer B (2020): Climate change genomics calls for standardised data reporting. Frontiers in Ecology & Evolution, doi: 10.3389/fevo.2020.00242
     
  • Waldvogel AM, Feldmeyer B, Exposito-Alonso M, Bataillon T, Bergland A, Flatt T, Guillaume F, Kofler R, Mock T, Rellstab C, Rolshausen G, Savolainen O, Schmid K, Schmitt I, Pfenninger M (2020): Evolutionary genomics can improve predictions of species' responses to climate change. Evolution Letters, doi: 10.1002/evl3.154
     
  • Schmidt H, Hellmann S L, Waldvogel AM, Feldmeyer B, Hankeln T, Pfenninger M (2020): A high-quality genome assembly from short and long reads for the non-biting midge Chironomus riparius (Diptera). G3:Genes|Genomes|Genetics, doi: 10.1534/g3.119.400710

 

2019

  • Müller R, Shinn C, Waldvogel AM, Oehlmann J, Ribeiro R, Moreira-Santos M (2019): Long-term effects of the fungicide pyrimethanil on aquatic primary producers in macrophyte-dominated outdoor mesocosms in two European ecoregions. Science of The Total Environment, 665:982-994, doi: 10.1016/j.scitotenv.2019.02.050

 

2018

  • Foucault Q, Wieser A, Heumann-Kiesler C, Diogo JB, Cocchiararo B, Nowak C, Waldvogel AM, Pfenninger M (2018): Experimental assessment of reproductive isolation and their consequences for seasonal hybridisation dynamics. Biological Journal of the Linnean Society, 126(2):327-337, doi: 10.1093/biolinnean/bly177
     
  • Foucault Q, Wieser A, Waldvogel AM, Feldmeyer B, Pfenninger M (2018): Rapid adaptation to high temperatures in Chironomus riparius. Ecology and Evolution, 8(24):12780-12789, doi: 10.1002/ece3.4706
     
  • Foucault Q, Wieser A, Waldvogel AM, Pfenninger M (2018): Establishing Laboratory Cultures and Performing Ecological and Evolutionary Experiments with the Emerging Model Species Chironomus riparius. Journal of Applied Entomology, doi: 10.1111/jen.12606
     
  • Waldvogel AM, Wieser A, Schell T, Patel S, Schmidt H, Hankeln T, Feldmeyer B, Pfenninger M (2018): The genomic footprint of climate adaptation in Chironomus riparius. Molecular Ecology, 27(6): 1439-1456, doi: 10.1111/mec.14543

 

2017

  • Oppold AM & Pfenninger M (2017): Direct estimation of the spontaneous mutation rate by short-term mutation accumulation lines in Chironomus riparius. Evolution Letters, 1:86-92, doi: 10.1002/evl3.8
     
  • Oppold AM, Schmidt H, Rose M, Hellmann SL, Dolze F, Ripp F, Weich B, Schmidt-Ott U, Schmidt E, Kofler R, Hankeln T, Pfenninger M (2017): Chironomus riparius (Diptera) genome sequencing reveals the impact of minisatellite transposable elements on population divergence. Molecular Ecology, 26:3256-3275, doi: 10.1111/mec.14111
     
  • Oppold AM & Müller R (2017): Epigenetics – A hidden target of insecticides. In: Epigenetics: how the environment can have impact on genes and regulate phenotypes. Advances in Insect Physiology. Volume 53, Verlinden H (eds), p. 313-324. doi: 10.1016/bs.aiip.2017.04.002
     

  • Kreß A, Oppold AM, Kuch U, Oehlmann J, Müller R (2017): Cold tolerance of the Asian tiger mosquito Aedes albopictus and its response to epigenetic alterations. Journal of Insect Physiology, 99: 113-121, doi: 10.1016/j.jinsphys.2017.04.003

     

2016

  • Oppold AM, Pedrosa JAM, Bálint M, Diogo JD, Ilkova J, Pestana JLT, Pfenninger M (2016): Support for the evolutionary speed hypothesis from intraspecific population genetic data in the non-biting midge Chironomus riparius. Proceedings of the Royal Society B, 283, 20152413, doi: 10.1098/rspb.2015.2413
     

  • Müller R, Charaf S, Scherer C, Oppold AM, Oehlmann J., Wagner M. (2016): Phenotypic and epigenetic effects of vinclozolin in the gastropod Physella acuta. Journal of Molluscan Studies, 82:2, 320-327, doi: 10.1093/mollus/eyv069

     

2015

  • Oppold AM, Kreß A, Vanden Bussche J, Diogo JB, Kuch U, Oehlmann J, Vandegehuchte MB, Müller R (2015): Epigenetic alterations and decreasing insecticide sensitivity of the Asian tiger mosquito Aedes albopictus. Ecotoxicology and Environmental Safety, 122, 45-53, doi: 10.1016/j.ecoenv.2015.06.036
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